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    2010

    2009

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    2007

Questions?, This page is under heavy construction. please email, dpogs@mail.utexas.edu if you\'re looking for a specific paper, Vol. 0, No. 0, p. 0.

    2006

    2005

Ellington, A. D., Davidson, E. A., Engineering regulatory RNAs, Trends Biotechnol, Vol. 23, No. 3, p. 109.

Cho, E. J., Yang, L., Levy, M., Ellington, A. D., Using a deoxyribozyme ligase and rolling circle amplification to detect a non-nucleic acid analyte, ATP, J Am Chem Soc, Vol. 127, No. 7, p. 2022.

Collett, J. R., Cho, E. J., Lee, J. F., Levy, M., Hood, A. J., Wan, C., Ellington, A. D., Functional RNA microarrays for high-throughput screening of antiprotein aptamers, Anal Biochem, Vol. 338, No. 1, p. 113.

Hughes, R. A., Ellington, A. D., Mistakes in translation don't translate into termination, Proc Natl Acad Sci U S A, Vol. 102, No. 5, p. 1273.

Bayer, T. S., Booth, L. N., Knudsen, S. M., Ellington, A. D., Arginine-rich motifs present multiple interfaces for specific binding by RNA, RNA, Vol. 2005, No. 11, p. 1848.

    2004

Chelliserrykattil, J., Ellington, A. D., Evolution of a T7 RNA ploymerase variant that transcribes 2'-O-methyl RNA, Nat Biotechnol, Vol. 22, No. 9, p. 1155.

Kirby, R., Cho, E. J., Gehrke, B., Bayer, T., Park, Y. S., Neikirk, D. P., McDevitt, J. T., Ellington, A. D., Aptamer-based sensor arrays for the detection and quantitation of proteins, Anal Chem, Vol. 76, No. 14, p. 4066.

Savran, C. A., Knudsen, S. M., Ellington, A. D., Manalis, S. R., Micromechanical detection of proteins using aptamer-based receptor molecules, Anal Chem, Vol. 76, No. 11, p. 3194.

Knudsen, S. M., Ellington, A. D., Ribozyme deja vu, Nat Struct Mol Biol, Vol. 11, No. 4, p. 301.

Robertson, M. P., Knudsen, S. M., Ellington, A. D., In vitro selection of ribozymes dependent on peptides for activity, Rna, Vol. 10, No. 1, p. 114.

Hoffman, M. M., Khrapov, M. A., Cox, J. C., Yao, J., Tong, L., Ellington, A. D., AANT: the Amino Acid-Nucleotide Interaction Database, Nucleic Acids Res, Vol. 32, No. 0, p. 0.

Lee, J. F., Hesselberth, J. R., Meyers, L. A., Ellington, A. D., Aptamer database, Nucleic Acids Res, Vol. 32, No. 0, p. 0.

Manimala, J. C., Wiskur, S. L., Ellington, A. D., Anslyn, E. V., Tuning the specificity of a synthetic receptor using a selected nucleic acid receptor, J Am Chem Soc, Vol. 126, No. 50, p. 16515.

Hughes, R. A., Robertson, M. P., Ellington, A. D., Levy, M., The importance of prebiotic chemistry in the RNA world, Curr Opin Chem Biol, Vol. 8, No. 6, p. 629.

Meyers, L. A., Lee, J. F., Cowperthwaite, M., Ellington, A. D., The robustness of naturally and artificially selected nucleic acid secondary structures, J Mol Evol, Vol. 58, No. 6, p. 681.

    2003

Ali, M. F., Kirby, R., Goodey, A. P., Rodriguez, M. D., Ellington, A. D., Neikirk, D. P., McDevitt, J. T., DNA hybridization and discrimination of single-nucleotide mismatches using chip-based microbead arrays, Anal Chem, Vol. 75, No. 18, p. 4732.

Bacher, J. M., Bull, J. J., Ellington, A. D., Evolution of phage with chemically ambiguous proteomes, BMC Evol Biol, Vol. 3, No. 1, p. 24.

Rajendran, M., Ellington, A. D., In vitro selection of molecular beacons, Nucleic Acids Res, Vol. 31, No. 19, p. 5700.

Tabor, J. J., Ellington, A. D., Playing to win at DNA computation, Nat Biotechnol, Vol. 21, No. 9, p. 1013.

Chelliserrykattil, J., Ellington, A. D., Autogene selections, Methods Mol Biol, Vol. 230, No. 0, p. 27.

Levy, M., Ellington, A. D., Exponential growth by cross-catalytic cleavage of deoxyribozymogens, Proc Natl Acad Sci U S A, Vol. 100, No. 11, p. 6416.

Levy, M., Ellington, A. D., Peptide-templated nucleic acid ligation, J Mol Evol, Vol. 56, No. 5, p. 607.

Hesselberth, J. R., Robertson, M. P., Knudsen, S. M., Ellington, A. D., Simultaneous detection of diverse analytes with an aptazyme ligase array, Anal Biochem, Vol. 312, No. 2, p. 106.

Hall, B., Ellington, A. D., Survival and polymerase chain reaction-based detection of nucleic acid taggant markers during bacterial growth and sterilization, Analytica Chimica Acta, Vol. 475, No. 0, p. 67.

    2002

Yang, X., Bassett, S. E., Li, X., Luxon, B. A., Herzog, N. K., Shope, R. E., Aronson, J., Prow, T. W., Leary, J. F., Kirby, R., Ellington, A. D., Gorenstein, D. G., Construction and selection of bead-bound combinatorial oligonucleoside phosphorothioate and phosphorodithioate aptamer libraries designed for rapid PCR-based sequencing, Nucleic Acids Res, Vol. 30, No. 23, p. 0.

Thompson, K. M., Syrett, H. A., Knudsen, S. M., Ellington, A. D., Group I aptazymes as genetic regulatory switches, BMC Biotechnol, Vol. 2, No. 1, p. 21.

Hesselberth, J. R., Ellington, A. D., A (ribo) switch in the paradigms of genetic regulation, Nat Struct Biol, Vol. 9, No. 12, p. 891.

Cox, J. C., Hayhurst, A., Hesselberth, J., Bayer, T. S., Georgiou, G., Ellington, A. D., Automated selection of aptamers against protein targets translated in vitro: from gene to aptamer, Nucleic Acids Res, Vol. 30, No. 20, p. 0.

Sooter, L. J., Ellington, A. D., Reflections on a novel therapeutic candidate, Chem Biol, Vol. 9, No. 8, p. 857.

Bacher, J. M., Reiss, B. D., Ellington, A. D., Anticipatory evolution and DNA shuffling, Genome Biol, Vol. 3, No. 8, p. 0.

Yan, A., Ellington, A. D., Aptamers as potential diagnostic reagents for diabetes, Diabetes Technol Ther, Vol. 4, No. 3, p. 339.

Hartig, J. S., Najafi-Shoushtari, S. H., Grune, I., Yan, A., Ellington, A. D., Famulok, M., Protein-dependent ribozymes report molecular interactions in real time, Nat Biotechnol, Vol. 20, No. 7, p. 717.

Cox, J. C., Rajendran, M., Riedel, T., Davidson, E. A., Sooter, L. J., Bayer, T. S., Schmitz-Brown, M., Ellington, A. D., Automated acquisition of aptamer sequences, Comb Chem High Throughput Screen, Vol. 5, No. 4, p. 289.

Rajendran, M., Ellington, A. D., Selecting nucleic acids for biosensor applications, Comb Chem High Throughput Screen, Vol. 5, No. 4, p. 263.

Levy, M., Ellington, A. D., ATP-dependent allosteric DNA enzymes, Chem Biol, Vol. 9, No. 4, p. 417.

Levy, M., Ellington, A. D., In vitro selection of a deoxyribozyme that can utilize multiple substrates, J Mol Evol, Vol. 54, No. 2, p. 180.

Flores, H., Ellington, A. D., Increasing the thermal stability of an oligomeric protein, beta-glucuronidase, J Mol Biol, Vol. 315, No. 3, p. 325.

Matsumura, I., Ellington, A. D., Mutagenic polymerase chain reaction of protein-coding genes for in vitro evolution, Methods Mol Biol, Vol. 182, No. 0, p. 259.

    2001

Chelliserrykattil, J., Cai, G., Ellington, A. D., A combined in vitro/in vivo selection for polymerases with novel promoter specificities, BMC Biotechnol, Vol. 1, No. 1, p. 13.

Sooter, L. J., Riedel, T., Davidson, E. A., Levy, M., Cox, J. C., Ellington, A. D., Toward automated nucleic acid enzyme selection, Biol Chem, Vol. 382, No. 9, p. 1327.

Levy, M., Ellington, A. D., Selection of deoxyribozyme ligases that catalyze the formation of an unnatural internucleotide linkage, Bioorg Med Chem, Vol. 9, No. 10, p. 2581.

Cox, J. C., Ellington, A. D., Automated selection of anti-protein aptamers, Bioorg Med Chem, Vol. 9, No. 10, p. 2525.

Levy, M., Ellington, A. D., RNA world: catalysis abets binding, but not vice versa, Curr Biol, Vol. 11, No. 16, p. 0.

Bacher, J. M., Ellington, A. D., Selection and characterization of Escherichia coli variants capable of growth on an otherwise toxic tryptophan analogue, J Bacteriol, Vol. 183, No. 18, p. 5414.

Hamaguchi, N., Ellington, A., Stanton, M., Aptamer beacons for the direct detection of proteins, Anal Biochem, Vol. 294, No. 2, p. 126.

Robertson, M. P., Ellington, A. D., In vitro selection of nucleoprotein enzymes, Nat Biotechnol, Vol. 19, No. 7, p. 650.

Levy, M., Ellington, A. D., The descent of polymerization, Nat Struct Biol, Vol. 8, No. 7, p. 580.

Christian, N. P., Reilly, J. P., Mokler, V. R., Wincott, F. E., Ellington, A. D., Elucidation of the initial step of oligonucleotide fragmentation in matrix-assisted laser desorption/ionization using modified nucleic acids, J Am Soc Mass Spectrom, Vol. 12, No. 6, p. 744.

Cox, J. C., Ellington, A. D., DNA computation function, Curr Biol, Vol. 11, No. 9, p. 0.

Robertson, M. P., Hesselberth, J. R., Ellington, A. D., Optimization and optimality of a short ribozyme ligase that joins non-Watson-Crick base pairings, Rna, Vol. 7, No. 4, p. 513.

Hoffman, D., Hesselberth, J., Ellington, A. D., Switching nucleic acids for antibodies, Nat Biotechnol, Vol. 19, No. 4, p. 313.

Matsumura, I., Olsen, M. J., Ellington, A. D., Optimization of heterologous gene expression for in vitro evolution, Biotechniques, Vol. 30, No. 3, p. 474.

Matsumura, I., Ellington, A. D., In vitro evolution of beta-glucuronidase into a beta-galactosidase proceeds through non-specific intermediates, J Mol Biol, Vol. 305, No. 2, p. 331.

    2000

Jhaveri, S., Rajendran, M., Ellington, A. D., Jhaveri, S., Rajendran, M., Ellington, A.D., In vitro selection of signaling aptamers, Nat Biotechnol, Vol. 18, No. 12, p. 1293.

Hesselberth, J., Robertson, M. P., Jhaveri, S., Ellington, A. D., In vitro selection of nucleic acids for diagnostic applications, J Biotechnol, Vol. 74, No. 1, p. 15.

Marshall, K. A., Ellington, A. D., In vitro selection of RNA aptamers, Methods Enzymol, Vol. 318, No. 0, p. 193.

Ellington, A. D., Khrapov, M., Shaw, C. A., The scene of a frozen accident, Rna, Vol. 6, No. 4, p. 485.

Robertson, M. P., Ellington, A. D., Design and optimization of effector-activated ribozyme ligases, Nucleic Acids Res, Vol. 28, No. 8, p. 1751.

Hirao, I., Madin, K., Endo, Y., Yokoyama, S., Ellington, A. D., RNA aptamers that bind to and inhibit the ribosome-inactivating protein, pepocin, J Biol Chem, Vol. 275, No. 7, p. 4943.

Hesselberth, J. R., Miller, D., Robertus, J., Ellington, A. D., In vitro selection of RNA molecules that inhibit the activity of ricin A-chain, J Biol Chem, Vol. 275, No. 7, p. 4937.

Jhaveri, S., et al., Designed signaling aptamers that transduce molecular recognition to changes in fluorescence intensity, J Am Chem Soc, Vol. 122, No. 11, p. 2469.

Jhaveri, S., Rajendran, M., Ellington, A.D., In vitro selection of signaling aptamers, Nat Biotechnol, Vol. 18, No. 12, p. 1293.

    1999

Jiang, F., Gorin, A., Hu, W., Majumdar, A., Baskerville, S., Xu, W., Ellington, A., Patel, D. J., Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples, Structure Fold Des, Vol. 7, No. 12, p. 1461.

Marshall, K. A., Ellington, A. D., Training ribozymes to switch, Nat Struct Biol, Vol. 6, No. 11, p. 992.

Marshall, K. A., Ellington, A. D., Molecular parasites that evolve longer genomes, J Mol Evol, Vol. 49, No. 5, p. 656.

James, K. D., Ellington, A. D., The fidelity of template-directed oligonucleotide ligation and the inevitability of polymerase function, Orig Life Evol Biosph, Vol. 29, No. 4, p. 375.

Ye, X., Gorin, A., Frederick, R., Hu, W., Majumdar, A., Xu, W., McLendon, G., Ellington, A., Patel, D. J., RNA architecture dictates the conformations of a bound peptide, Chem Biol, Vol. 6, No. 9, p. 657.

Roberston, M.P., Werner, M., Ellington, A.D., Aptazymes as generalized signal transducers, Nucleic Acids Symp Ser, Vol. 41, No. 0, p. 1.

Matsumura, I., Wallingford, J. B., Surana, N. K., Vize, P. D., Ellington, A. D., Directed evolution of the surface chemistry of the reporter enzyme beta-glucuronidase, Nat Biotechnol, Vol. 17, No. 7, p. 696.

Ellington, A. D., Molecular origins and the null hypothesis: motifs from our maker?, Biol Bull, Vol. 196, No. 3, p. 315.

Arnold, R. J., Karty, J. A., Ellington, A. D., Reilly, J. P., Monitoring the growth of a bacteria culture by MALDI-MS of whole cells, Anal Chem, Vol. 71, No. 10, p. 1990.

Kauffman, S., Ellington, A. D., Thinking combinatorially, Curr Opin Chem Biol, Vol. 3, No. 3, p. 256.

Baskerville, S., Zapp, M., Ellington, A. D., Anti-Rex aptamers as mimics of the Rex-binding element, J Virol, Vol. 73, No. 6, p. 4962.

Matsumura, I., Ellington, A. D., In vitro evolution of thermostable p53 variants, Protein Sci, Vol. 8, No. 4, p. 731.

Cox, J. C., Cohen, D. S., Ellington, A. D., The complexities of DNA computation, Trends Biotechnol, Vol. 17, No. 4, p. 151.

Symensma, T. L., Baskerville, S., Yan, A., Ellington, A. D., Polyvalent Rev decoys act as artificial Rev-responsive elements, J Virol, Vol. 73, No. 5, p. 4341.

Robertson, M. P., Ellington, A. D., In vitro selection of an allosteric ribozyme that transduces analytes to amplicons, Nat Biotechnol, Vol. 17, No. 1, p. 62.

Ellington, A.D., Hesselberth, J., Jhaveri, S., Robertson, M.P., Combinatorial methods: aptamers and aptazymes, Proc SPIE, Vol. 3858, No. 0, p. 126.

Ellington, A.D., Robertson, M.P., Ribozyme selection, Comprehensive Natural Products Chemistry, Vol. 6, No. 0, p. 115.

Ellington, A.D., Robertson, M.P., James, K.D., Cox, J.C., Strategies for DNA computing, DIMACS, Vol. 48, No. 0, p. 173.

Eppley, H., Lato, S.M., Zaleski, J.M., Ellington, A.D., Transition metal kinamycin model as DNA photocleaver for hypoxic environments: bis(9-diazo-4,5-diazafluorene) copper(II) nitrate, Chem Commun, Vol. 23, No. 0, p. 2405.

Novotny, M.V., Ellington, A.D., Miao, Z., Pagel, M.D., Lato, S.M., Stone, M.J., Zidek, L., NMR mapping of the recombinant mouse major urinary protein I binding site occupied by the pheromone 2-sec-butyl-4,5-dihydrothiazole, Biochemistry, Vol. 38, No. 31, p. 9850.

    1998

Jhaveri, S., Olwin, B., Ellington, A. D., In vitro selection of phosphorothiolated aptamers, Bioorg Med Chem Lett, Vol. 8, No. 17, p. 2285.

Cox, J. C., Rudolph, P., Ellington, A. D., Automated RNA selection, Biotechnol Prog, Vol. 14, No. 6, p. 845.

Rowsell, S., Stonehouse, N. J., Convery, M. A., Adams, C. J., Ellington, A. D., Hirao, I., Peabody, D. S., Stockley, P. G., Phillips, S. E., Crystal structures of a series of RNA aptamers complexed to the same protein target, Nat Struct Biol, Vol. 5, No. 11, p. 970.

James, K. D., Boles, A. R., Henckel, D., Ellington, A. D., The fidelity of template-directed oligonucleotide ligation and its relevance to DNA computation, Nucleic Acids Res, Vol. 26, No. 22, p. 5203.

Robertson, M. P., Ellington, A. D., Ribozymes. How to make a nucleotide, Nature, Vol. 395, No. 6699, p. 223.

Potyrailo, R. A., Conrad, R. C., Ellington, A. D., Hieftje, G. M., Adapting selected nucleic acid ligands (aptamers) to biosensors, Anal Chem, Vol. 70, No. 16, p. 3419.

Bell, S. D., Denu, J. M., Dixon, J. E., Ellington, A. D., RNA molecules that bind to and inhibit the active site of a tyrosine phosphatase, J Biol Chem, Vol. 273, No. 23, p. 14309.

Convery, M. A., Rowsell, S., Stonehouse, N. J., Ellington, A. D., Hirao, I., Murray, J. B., Peabody, D. S., Phillips, S. E., Stockley, P. G., Crystal structure of an RNA aptamer-protein complex at 2.8 A resolution, Nat Struct Biol, Vol. 5, No. 2, p. 133.

Bacher, J.M., Ellington, A.D., Nucleic acid selection as a tool for drug discovery, Drug Discov Today, Vol. 3, No. 6, p. 265.

Baskerville, S., Frank, D.N., Ellington, A.D., Directed evolutionary descriptions of RNA structure, RNA Structure and Function, Vol. 0, No. 0, p. 203.

Conrad, R.C., Bruck, F.M., Bell, S., Ellington, A.D., In vitro selection of nucleic acid ligands, Nucleic Acid-Protein Interactions: a practical approach, Vol. 0, No. 0, p. 285.

Hirao, I., Ellington, A.D., In vitro selection of aptamers that bind to wild-type and mutant MS2 coat proteins, Nucleic Acids Symp Ser, Vol. 39, No. 0, p. 75.

James, K.D., Ellington, A.D., The use of aluminum chloride for removal of Boc groups on 5-amino-2, 5-dideoxyoligonucleotides during solid-phase synthesis, Tetrahedron Lett, Vol. 39, No. 0, p. 175.

    1997

Ellington, A. D., Robertson, M. P., Bull, J., Ribozymes in wonderland, Science, Vol. 276, No. 5312, p. 546.

Good, P. D., Krikos, A. J., Li, S. X., Bertrand, E., Lee, N. S., Giver, L., Ellington, A., Zaia, J. A., Rossi, J. J., Engelke, D. R., Expression of small, therapeutic RNAs in human cell nuclei, Gene Ther, Vol. 4, No. 1, p. 45.

Osborne, S. E., Ellington, A. D., Nucleic Acid Selection and the Challenge of Combinatorial Chemistry, Chem Rev, Vol. 97, No. 2, p. 349.

Osborne, S. E., Matsumura, I., Ellington, A. D., Aptamers as therapeutic and diagnostic reagents: problems and prospects, Curr Opin Chem Biol, Vol. 1, No. 1, p. 9.

Hirao, I., Yoshinari, S., Yokoyama, S., Endo, Y., Ellington, A. D., In vitro selection of aptamers that bind to ribosome-inactivating toxins, Nucleic Acids Symp Ser, Vol. 0, No. 37, p. 283.

James, K. D., Ellington, A. D., Surprising fidelity of template-directed chemical ligation of oligonucleotides, Chem Biol, Vol. 4, No. 8, p. 595.

Conrad, R. C., Symensma, T. L., Ellington, A. D., Natural and unnatural answers to evolutionary questions, Proc Natl Acad Sci U S A, Vol. 94, No. 14, p. 7126.

Marshall, K. A., Robertson, M. P., Ellington, A. D., A biopolymer by any other name would bind as well: a comparison of the ligand-binding pockets of nucleic acids and proteins, Structure, Vol. 5, No. 6, p. 729.

Robertson, M. P., Ellington, A. D., Ribozymes: red in tooth and claw, Curr Biol, Vol. 7, No. 6, p. 0.

Ellington, A.D., Matsumura, I., Engineering evolution -- with molecules, Br Yearb Sci, Vol. 0, No. 0, p. 178.

Hoaglund, C.S., Liu, Y., Ellington, A.D., Pagel, M., Clemmer, D.E., Gas-phase DNA: conformations of olgiothymidine ions, J Am Chem Soc, Vol. 119, No. 38, p. 9051.

James, K.D., Von Kiedrowski, G., Ellington, A.D., Incorporation of 5-N-Boc-2O, 5O-dideoxynucleoside-3O-O-phosphoramidites into oligonucleotides by automated synthesis, Nucleosides Nucleotides, Vol. 16, No. 10, p. 1821.

Jhaveri, S., Hirao, I., Bell, S.D., Uphoff, K., Ellington, A.D, Landscapes for molecular evolution: lessons from in vitro selection experiments with nucleic acids, Comb Chem Mol Diver, Vol. 5, No. 0, p. 169.

Kay, B.K., Ellington, A.D., Combinatorial biology and evolution: a perspective, Annual Reports in Combinatorial Chemistry and Molecular Diversity, Vol. 1, No. 0, p. 93.

Valentine, S., Anderson, J., Ellington, A.D., Clemmer, D., Disulfide-intact and reduced lysozyme in the gas phase: conformations and pathways of folding and unfolding, J Phys Chem B, Vol. 101, No. 0, p. 3891.

Burmeister, J., von Kiedrowski, G., Ellington, A.D., Cofactor-assisted self-cleavage in DNA libraries with a 3\'-\'5\'-phosphoramidate bond, Angew Chem Int Ed Engl, Vol. 36, No. 12, p. 1321.

    1996

Frank, D. N., Ellington, A. E., Pace, N. R., In vitro selection of RNase P RNA reveals optimized catalytic activity in a highly conserved structural domain, RNA, Vol. 2, No. 12, p. 1179.

Ye, X., Gorin, A., Ellington, A. D., Patel, D. J., Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex, Nat Struct Biol, Vol. 3, No. 12, p. 1026.

Ellington, A. D., Leclerc, F., Cedergren, R., An RNA groove, Nat Struct Biol, Vol. 3, No. 12, p. 981.

Conrad, R., Ellington, A. D., Detecting immobilized protein kinase C isozymes with RNA aptamers, Anal Biochem, Vol. 242, No. 2, p. 261.

Lato, S. M., Ellington, A. D., Screening chemical libraries for nucleic-acid-binding drugs by in vitro selection: a test case with lividomycin, Mol Divers, Vol. 2, No. 2, p. 103.

Saldanha, R., Ellington, A., Lambowitz, A. M., Analysis of the CYT-18 protein binding site at the junction of stacked helices in a group I intron RNA by quantitative binding assays and in vitro selection, J Mol Biol, Vol. 261, No. 1, p. 23.

Xu, W., Ellington, A. D., Anti-peptide aptamers recognize amino acid sequence and bind a protein epitope, Proc Natl Acad Sci U S A, Vol. 93, No. 15, p. 7475.

Soukup, G. A., Ellington, A. D., Maher, L. J., 3rd, Selection of RNAs that bind to duplex DNA at neutral pH, J Mol Biol, Vol. 259, No. 2, p. 216.

Uphoff, K. W., Bell, S. D., Ellington, A. D., In vitro selection of aptamers: the dearth of pure reason, Curr Opin Struct Biol, Vol. 6, No. 3, p. 281.

Nelson, J. S., Giver, L., Ellington, A. D., Letsinger, R. L., Incorporation of a non-nucleotide bridge into hairpin oligonucleotides capable of high-affinity binding to the Rev protein of HIV-1, Biochemistry, Vol. 35, No. 16, p. 5339.

Rozen, D. E., McGrew, S., Ellington, A. D., Molecular computing: Does DNA compute?, Curr Biol, Vol. 6, No. 3, p. 254.

Srinivasan, J., Leclerc, F., Xu, W., Ellington, A. D., Cedergren, R., A docking and modelling strategy for peptide-RNA complexes: applications to BIV Tat-TAR and HIV Rev-RBE, Fold Des, Vol. 1, No. 6, p. 463.

Conrad, R. C., Giver, L., Tian, Y., Ellington, A. D., In vitro selection of nucleic acid aptamers that bind proteins, Methods Enzymol, Vol. 267, No. 0, p. 336.

Symensma, T. L., Giver, L., Zapp, M., Takle, G. B., Ellington, A. D., RNA aptamers selected to bind human immunodeficiency virus type 1 Rev in vitro are Rev responsive in vivo, J Virol, Vol. 70, No. 1, p. 179.

Matsumura, I., Ellington, A. D., DNA shuffling brightens prospects for GFP, Nat Biotechnol, Vol. 14, No. 3, p. 366.

Christian, N.P., Giver, L., Ellington, A.D., Effects of matrix variations and the presence of iron on MALDI mass spectra of DNA, Rapid Commun Mass Spectrom, Vol. 10, No. 0, p. 1980.

Osborne, S.E., Ellington, A.D., Incorporating disulfide cross-links at the terminus of oligonucleotides via solid-phase nucleic acid synthesis, Bioorg Med Chem Lett, Vol. 6, No. 19, p. 2339.

    1995

James, K. D., Ellington, A. D., The search for missing links between self-replicating nucleic acids and the RNA world, Orig Life Evol Biosph, Vol. 25, No. 6, p. 515.

Baskerville, S., Zapp, M., Ellington, A. D., High-resolution mapping of the human T-cell leukemia virus type 1 Rex-binding element by in vitro selection, J Virol, Vol. 69, No. 12, p. 7559.

Conrad, R. C., Baskerville, S., Ellington, A. D., In vitro selection methodologies to probe RNA function and structure, Mol Divers, Vol. 1, No. 1, p. 69.

Hirao, I., Ellington, A. D., Re-creating the RNA world, Curr Biol, Vol. 5, No. 9, p. 1017.

Kumar, P. K., Ellington, A. D., Artificial evolution and natural ribozymes, Faseb J, Vol. 9, No. 12, p. 1183.

Tian, Y., Adya, N., Wagner, S., Giam, C. Z., Green, M. R., Ellington, A. D., Dissecting protein:protein interactions between transcription factors with an RNA aptamer, RNA, Vol. 1, No. 3, p. 317.

Baskerville, S., Ellington, A. D., RNA structure. Describing the elephant, Curr Biol, Vol. 5, No. 2, p. 120.

Ellington, A. D., Symensma, T. L., Giver, L., Baskerville, S., A simple code for protein:RNA interactions, Nucleic Acids Symp Ser, Vol. 33, No. 0, p. 156.

Christian, N. P., Colby, S. M., Giver, L., Houston, C. T., Arnold, R. J., Ellington, A. D., Reilly, J. P., High resolution matrix-assisted laser desorption/ionization time-of-flight analysis of single-stranded DNA of 27 to 68 nucleotides in length, Rapid Commun Mass Spectrom, Vol. 9, No. 11, p. 1061.

Ellington, A. D., Conrad, R., Aptamers as potential nucleic acid pharmaceuticals, Biotechnol Annu Rev, Vol. 1, No. 0, p. 185.

Lato, S. M., Boles, A. R., Ellington, A. D., In vitro selection of RNA lectins: using combinatorial chemistry to interpret ribozyme evolution, Chem Biol, Vol. 2, No. 5, p. 291.

    1994

Conrad, R., Keranen, L. M., Ellington, A. D., Newton, A. C., Isozyme-specific inhibition of protein kinase C by RNA aptamers, J Biol Chem, Vol. 269, No. 51, p. 32051.

Leclerc, F., Cedergren, R., Ellington, A. D., A three-dimensional model of the Rev-binding element of HIV-1 derived from analyses of aptamers, Nat Struct Biol, Vol. 1, No. 5, p. 293.

Ellington, A. D., RNA selection. Aptamers achieve the desired recognition, Curr Biol, Vol. 4, No. 5, p. 427.

Ellington, A.D., Empirical explorations of sequence space: host-guest chemistry in the RNA world, Ber Bunsenges Phys Chem, Vol. 98, No. 0, p. 1115.

Ellington, A.D., The past and future of aptamers: nucleic acids in prebiotic times and therapeutic realms, Nucleic Acids Symp Ser, Vol. 31, No. 0, p. 251.

Ellington, A.D., Using in vitro seleciton for conventional drug design, drug development, Research, Vol. 33, No. 0, p. 102.

Giver, L., Lato, S., Ellington, A.D., Models for the authocatalytic replication of RNA, Self-Production of Supramolecular Structures, Vol. 0, No. 0, p. 136.

    1993

Ellington, A. D., Out of shape but fit for recognition, Curr Biol, Vol. 3, No. 6, p. 375.

Giver, L., Bartel, D. P., Zapp, M. L., Green, M. R., Ellington, A. D., Selection and design of high-affinity RNA ligands for HIV-1 Rev, Gene, Vol. 137, No. 1, p. 19.

Giver, L., Bartel, D., Zapp, M., Pawul, A., Green, M., Ellington, A. D., Selective optimization of the Rev-binding element of HIV-1, Nucleic Acids Res, Vol. 21, No. 23, p. 5509.

Ellington, A. D., Experimental testing of theories of an early RNA world, Methods Enzymol, Vol. 224, No. 0, p. 646.

Ellington, A.D., Purification of oligonucleotides by deaturing polyacrylamide gel electrophoresis, Current Protocols in Molecular Biology, Vol. 2, No. 0, p. 1.

Szostak, J.W., Ellington, A.D., In vitro selection of novel functional RNA sequences, The RNA World, Vol. 0, No. 0, p. 0.

    1992

Ellington, A. D., Szostak, J. W., Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures, Nature, Vol. 355, No. 6363, p. 850.

Ellington, A. D., New ribozymes for old reactions, Curr Biol, Vol. 2, No. 8, p. 437.

Ellington, A.D., Ribozyme, 1992 McGraw-Hill Yearbook of Science and Technology, Vol. 0, No. 0, p. 401.

    1991

Weinhold, E. G., Glasfeld, A., Ellington, A. D., Benner, S. A., Structural determinants of stereospecificity in yeast alcohol dehydrogenase, Proc Natl Acad Sci U S A, Vol. 88, No. 19, p. 8420.

Benner, S. A., Ellington, A. D., RNA world, Science, Vol. 252, No. 5010, p. 1232.

Green, R., Ellington, A.D., Bartel, D.P., Szostak, J.W., In vitro genetic analysis: selection and amplification of rare functional nucleic aicds, Methods, Vol. 2, No. 1, p. 75.

    1990

Schultes, N. P., Ellington, A. D., Cherry, J. M., Szostak, J. W., Saccharomyces cerevisiae homoserine kinase is homologous to prokaryotic homoserine kinases, Gene, Vol. 96, No. 2, p. 177.

Michel, F., Ellington, A. D., Couture, S., Szostak, J. W., Phylogenetic and genetic evidence for base-triples in the catalytic domain of group I introns, Nature, Vol. 347, No. 6293, p. 578.

Couture, S., Ellington, A. D., Gerber, A. S., Cherry, J. M., Doudna, J. A., Green, R., Hanna, M., Pace, U., Rajagopal, J., Szostak, J. W., Mutational analysis of conserved nucleotides in a self-splicing group I intron, J Mol Biol, Vol. 215, No. 3, p. 345.

Green, R., Ellington, A. D., Szostak, J. W., In vitro genetic analysis of the Tetrahymena self-splicing intron, Nature, Vol. 347, No. 6291, p. 406.

Ellington, A. D., Szostak, J. W., In vitro selection of RNA molecules that bind specific ligands, Nature, Vol. 346, No. 6287, p. 818.

Benner, S.A., Ellington, A.D., Evolution and structural theory: the frontier between chemistry and biology, Bioorganic Chemistry Frontiers, Vol. 0, No. 0, p. 0.

Benner, S.A., Ellington, A.D., "Progenote" or "Protogenote"?, Science, Vol. 248, No. 0, p. 943.

Ellington, A.D., Characteristics of amino acids, Current Protocols in Molecular Biology, Vol. 0, No. 0, p. 0.

    1989

Benner, S. A., Ellington, A. D., Tauer, A., Modern metabolism as a palimpsest of the RNA world, Proc Natl Acad Sci U S A, Vol. 86, No. 18, p. 7054.

Ellington, A.D., Green, D.R., Synthesis of Oligonucleotides, Current Protocols in Molecular Biology, Vol. 0, No. 0, p. 0.

    1988

Ellington, A. D., Benner, S. A., Return of the last ribo-organism, Nature, Vol. 332, No. 6166, p. 688.

Benner, S., Ellington, A. D., Interpreting the behavior of enzymes: purpose or pedigree?, CRC Crit Rev Biochem, Vol. 23, No. 4, p. 369.

Ellington, A.D., Evolutionary optimization of isozymes, PhD Thesis, Vol. 0, No. 0, p. 0.

    1987

Benner, S. A., Ellington, A. D., The last ribo-organism, Nature, Vol. 329, No. 6137, p. 295.

Ellington, A. D., Benner, S. A., Free energy differences between enzyme bound states, J Theor Biol, Vol. 127, No. 4, p. 491.

Benner, S. A., Allemann, R. K., Ellington, A. D., Ge, L., Glasfeld, A., Leanz, G. F., Krauch, T., MacPherson, L. J., Moroney, S., Piccirilli, J. A., et al.,, Natural selection, protein engineering, and the last riboorganism: rational model building in biochemistry, Cold Spring Harb Symp Quant Biol, Vol. 52, No. 0, p. 53.

Weinhold, E.G., Ellington, A.D., Presnell, S.R., McGeehan, G.M., Benner, S.A., Evolutionary guidance: engineering alcohol dehydrogenase and RNase, Protein Eng, Vol. 1, No. 0, p. 236.